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Bookmark or Share- Alignment-free homology detection - Nature MethodsBy training the model to distinguish homologous from nonhomologous protein pairs, DHR allows homology detection in an alignment-free manner. It is particularly adept at unveiling subtle...
- Fast, sensitive detection of protein homologs using deep dense ... - NatureHere, we offer an ultrafast, highly sensitive method, dense homolog retriever (DHR), for detecting homologs on the basis of a protein language model and dense retrieval techniques. Its...
- soedinglab/hh-suite: Remote protein homology detection suite. - GitHubThe HH-suite is an open-source software package for sensitive protein sequence searching based on the pairwise alignment of hidden Markov models (HMMs). We provide an extensive user guide with many usage examples, frequently asked questions and guides to build your own databases.
- Protein remote homology detection and structural alignment ... - NatureWe show the merits of TM-Vec and DeepBLAST on a variety of datasets, including better identification of remotely homologous proteins compared with state-of-the-art sequence alignment and structure...
- HH-suite3 for fast remote homology detection and deep protein ...HH-suite is a widely used open source software suite for sensitive sequence similarity searches and protein fold recognition. It is based on pairwise alignment of profile Hidden Markov models (HMMs), which represent multiple sequence alignments of homologous proteins.
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